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Porting and using PanGIA for Cytoscape 3: challenges and solutions.

Welker, David Demchak, Barry

Published in F1000Research

Much of the biologically significant functionality in Cytoscape is contained within third-party add-ons, called plugins in Cytoscape 2 and apps in Cytoscape 3. In the transition from Cytoscape 2 to Cystoscape 3, some of the underlying assumptions upon which plugins relied changed, requiring a significant porting effort for plugins to work as Cytosc...

The Cytoscape app article collection.

Pico, Alexander R Bader, Gary D Demchak, Barry Guitart Pla, Oriol Hull, Timothy Longabaugh, William Lopes, Christian Lotia, Samad Molenaar, Piet Montojo, Jason ...

Published in F1000Research

As a network visualization and analysis platform, Cytoscape relies on apps to provide domain-specific features and functions. There are many resources available to support Cytoscape app development and distribution, including the Cytoscape App Store and an online "cookbook" for app developers. This article collection is another resource to help res...

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