PiNGO: a Cytoscape plugin to find candidate genes in biological networks.
Published in Bioinformatics
cyNeo4j: connecting Neo4j and Cytoscape.
Published in Bioinformatics
SPINE: a framework for signaling-regulatory pathway inference from cause-effect experiments.
Published in Bioinformatics
NetworkBLAST: comparative analysis of protein networks.
Published in Bioinformatics
Discovering regulatory and signalling circuits in molecular interaction networks.
Published in Bioinformatics
Inferring gene ontologies from pairwise similarity data.
Published in Bioinformatics (Oxford, England)
While the manually curated Gene Ontology (GO) is widely used, inferring a GO directly from -omics data is a compelling new problem. Recognizing that ontologies are a directed acyclic graph (DAG) of terms and hierarchical relations, algorithms are needed that: analyze a full matrix of gene-gene pairwise similarities from -omics data; infer true hier...
Correcting for gene-specific dye bias in DNA microarrays using the method of maximum likelihood.
Published in Bioinformatics
Evidence mining and novelty assessment of protein-protein interactions with the ConsensusPathDB plugin for Cytoscape.
Published in Bioinformatics
Bioinformatics in the human interactome project.
Published in Bioinformatics
Nonlinear dimension reduction and clustering by Minimum Curvilinearity unfold neuropathic pain and tissue embryological ...
Published in Bioinformatics
